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Return taxa info for haplotype IDs

Source: R/class_all_generics.R, R/class_phg_dataset.R
taxaByNode.Rd

Returns taxa (e.g. sample) information for a select set of reference ranges. Reference ranges are identified by a user defined genomic range consisting of a sequence (e.g. chromosome) ID, and start and stop positions.

Usage

taxaByNode(object, ...)

# S4 method for PHGDataSet
taxaByNode(object, samples = NULL, seqnames, start, end)

Arguments

object

A PHGDataSet object

...

Additional arguments, for use in specific methods

samples

Samples/taxa to include in plot

seqnames

A sequence (e.g. chromosome) ID

start

Start position for ref ranges

end

End position for ref ranges