Generate dot plot from Anchor files

This function will generate a dot plot (collinearity) from an Anchor File generated from the program [AnchorWave](https://github.com/baoxingsong/AnchorWave). This is one of the preliminary steps in creating a PHG database.

Usage

plotDot(
  anchorPath,
  querySeqId = NULL,
  refSeqId = NULL,
  queryLab = NULL,
  refLab = NULL,
  colorId = c("strand", "score")
)

Arguments

anchorPath

Path to anchor file.

querySeqId

Vector of sequence IDs (query).

refSeqId

Vector of sequence IDs (reference).

queryLab

Optional label for query axis.

refLab

Optional label for reference axis.

colorId

How to color plots (strand or score)