Skip to contents

A HaplotypeGraph Class

Source: R/class_haplotype_graph.R
HaplotypeGraph-class.Rd

Class HaplotypeGraph defines a rPHG Class for storing a HaplotypeGraph object defined in the PHG API

Prints out information regarding properties from the HaplotypeGraph class to the console

Usage

# S4 method for HaplotypeGraph
show(object)

Arguments

object

A HaplotypeGraph object

Slots

methodID

A PHGMethod object

methodType

The method type (e.g. PATHS, CONSENSUS, etc.)

nChrom

Number of chromosomes

nNodes

Number of nodes

nRefRanges

Number of reference ranges

nTaxa

Number of taxa

jHapGraph

An rJava jobjRef object representing a HaplotypeGraph class in the PHG API

jMemAddress

An identifier string to the JVM memory space